Publications by Peter White

  1. Rieck S; White P; Schug J; Fox AJ; Smirnova O; Gao N; Gupta RK; Wang ZV; Scherer PE; Keller MP; Attie AD; Kaestner KH. 2009. The transcriptional response of the islet to pregnancy in mice.  Molecular Endocrinology (Baltimore, Md.). Vol. 23, no. 10. (October 1): 1702.
  2. Le Lay J; Tuteja G; White P; Dhir R; Ahima R; Kaestner KH. 2009. CRTC2 (TORC2) contributes to the transcriptional response to fasting in the liver but is not required for the maintenance of glucose homeostasis.  Cell Metabolism. Vol. 10, no. 1. (July 1): 55-62. http://www.ncbi.nlm.nih.gov/pubmed/19583954.
  3. Tuteja, Geetu. White, Peter. Schug, Jonathan. Kaestner, Klaus H. 2009. Extracting transcription factor targets from ChIP-Seq data.  Nucleic Acids Research. Vol. 17, no. 37: e113. http://www.ncbi.nlm.nih.gov/pubmed/19553195.
  4. Li, Zhaoyu. White, Peter. Tuteja, Geetu. Rubins, Nir. Sackett, Sara. Kaestner, Klaus H. 2009. Foxa1 and Foxa2 regulate bile duct development in mice.  Journal of Clinical Investigation. Vol. 119, no. 6: 1537-1545. http://www.ncbi.nlm.nih.gov/pubmed/19436110.
  5. White P & Kaestner KH. 2009. Gene expression analysis in diabetes research. In Methods of Molecular Medicine: Type 2 Diabetes. Vol. 560. Edited by Claire Stocker. New York, New York, USA: The Humana Press Inc. 239-261. http://www.ncbi.nlm.nih.gov/pubmed/19504254
  6. Golson, Maria L. Le Lay, John. Gao, Nan. Brämswig, Nuria. Loomes, Kathleen M. Oakey, Rebecca. May, Catherine L. White, Peter. Kaestner, Klaus H. 2009. Jagged1 is a competitive inhibitor of Notch signaling in the embryonic pancreas.  Mechanisms of Development. Vol. 126, no. 8-9: 687. http://www.ncbi.nlm.nih.gov/pubmed/19501159.
  7. Gao, Nan. White, Peter. Kaestner, Klaus H. 2009. Establishment of Intestinal Identity and Epithelial-Mesenchymal Signaling by Cdx2.  Developmental Cell. Vol. 16, no. 4: 588-599. http://www.ncbi.nlm.nih.gov/pubmed/19386267.
  8. Anderson KR, White P, Kaestner KH, Sussle L. 2009. Identification of known and novel pancreas genes expressed downstream of Nkx2.2 during development.  BMC Developmental Biology. Vol. 1, no. 9. http://www.ncbi.nlm.nih.gov/pubmed/20003319.
  9. White P, Lee May C, Lamounier RN, Brestelli JE, Kaestner KH. 2008. Defining pancreatic endocrine precursors and their descendants. Diabetes. Vol. 57, no. 3: 654-668. http://www.ncbi.nlm.nih.gov/pubmed/18660816. (IF: 8.261)
  10. Tuteja G, Jensen ST, White P, Kaestner KH. 2008. Cis-regulatory modules in the mammalian liver: composition depends on strength of Foxa2 consensus site. Nucleic Acids Research. Vol. 36, no. 12: 4149-4157. http://www.ncbi.nlm.nih.gov/pubmed/18556755. (IF: 6.954)
  11. Mullany LK, White P, Hanse EA, Nelsen CJ, Goggin MM, Mullany JE, Anttila CK, Greenbaum LE, Kaestner KH, Albrecht JH. 2008. Distinct proliferative and transcriptional effects of the D-type cyclins in vivo. Cell Cycle. Vol. 7, no. 14: 2215-2224. http://www.ncbi.nlm.nih.gov/pubmed/18635970. (IF: 3.314)
  12. Bochkis, IM, Rubins NE, White P, Friedman JR, Kaestner KH. 2008. Hepatocyte-specific ablation of Foxa2 alters bile acid homeostasis and results in endoplasmic reticulum stress.  Nature Medicine. Vol. 14, no. 8: 828-836. http://www.ncbi.nlm.nih.gov/pubmed/18660816. (IF: 26.382)
  13. Keller DM; McWeeney S; Arsenlis A; Drouin J; Wright CV; Wang H; Wollheim CB; White P; Kaestner KH; Goodman RH. 2007. Characterization of pancreatic transcription factor Pdx-1 binding sites using promoter microarray and serial analysis of chromatin occupancy.  The Journal Of Biological Chemistry. Vol. 282, no. 44. (November 2): 32084.
  14. Mazzarelli JM, Brestelli J, Gorski RK, Liu J, Manduchi E, Pinney DF, Schug J, White P, Kaestner KH, Stoeckert CJ Jr. 2007. EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.  Nucleic Acids Research. Vol. 35: D751-D755. http://www.ncbi.nlm.nih.gov/pubmed/17071715.
  15. Ku HT, Chai J, Kim YJ, White P, Purohit-Ghelani S, Kaestner KH, Bromberg JS. 2007. Insulin-expressing colonies developed from murine embryonic stem cell-derived progenitors.  Diabetes. Vol. 56, no. 4: 921-929. http://www.ncbi.nlm.nih.gov/pubmed/17395739.
  16. Hardy OT, Hohmeier HE, Becker TC, Manduchi E, Doliba NM, Gupta RK, White P, Stoeckert CJ Jr, Matschinsky FM, Newgard CB, Kaestner KH. 2007. Functional genomics of the ß-cell: SCHAD regulates insulin secretion independent of K+ currents.  Molecular Endocrinology. Vol. 21, no. 3: 765-773. http://www.ncbi.nlm.nih.gov/pubmed/17185391.
  17. Gupta RK, Gao N, Gorski RK, White P, Hardy OT, Rafiq K, Brestelli JE, Chen G, Stoeckert CJ Jr, Kaestner KH. 2007. Expansion of adult beta-cell mass in response to increased metabolic demand is dependent on HNF-4alpha.  Genes and Development. Vol. 21, no. 7: 756-769. http://www.ncbi.nlm.nih.gov/pubmed/17403778.
  18. Gao N, White P, Doliba N, Golson ML, Matschinsky FM, Kaestner KH. 2007. Foxa2 controls vesicle docking and insulin secretion in mature Beta cells.  Cell Metabolism. Vol. 6, no. 4: 267-279. http://www.ncbi.nlm.nih.gov/pubmed/17908556.
  19. Mazzarelli JM; White P; Gorski R; Brestelli J; Pinney DF; Arsenlis A; Katokhin A; Belova O; Bogdanova V; Elisafenko E; Gubina M; Nizolenko L; Perelman P; Puzakov M; Shilov A; Trifonoff V; Vorobjeva N; Kolchanov N; Kaestner KH; Stoeckert CJ Jr. 2006. Novel genes identified by manual annotation and microarray expression analysis in the pancreas.  Genomics. Vol. 88, no. 6. (December 1): 752.
  20. Burkhardt BR, Greene SR, White P, Wong RK, Brestelli JE, Yang J, Robert CE, Brusko TM, Wasserfall CH, Wu J, Atkinson MA, Gao Z, Kaestner KH, Wolf BA. 2006. PANDER-induced cell-death genetic networks in islets reveal central role for caspase-3 and cyclin-dependent kinase inhibitor 1A (p21).  Gene. Vol. 369: 134-141. http://www.ncbi.nlm.nih.gov/pubmed/16412588.
  21. White P, Brestelli JE, Kaestner KH, Greenbaum LE. 2005. Identification of transcriptional networks during liver regeneration.  Journal of Biological Chemistry. Vol. 280, no. 5: 3715-3722. http://www.ncbi.nlm.nih.gov/pubmed/15546871.
  22. Dauncey MJ and White P. 2004. Nutrition and cell communication: Insulin signalling in development, health and disease. In Recent Research Developments in Nutrition. Kerala, India: Research Signpost. 49-81.
  23. Dauncey MJ, Katsumata M and White P. 2004. Nutrition, hormone receptor expression, and gene interactions: implications for development and disease. In Muscle Development of Livestock Animals: Physiology, Genetics and Meat Quality. Oxfordshire, UK: CAB International Publishing. 105-124.
  24. White P, Liebhaber SA, Cooke NE. 2002. 129X1/SvJ mouse strain has a novel defect in inflammatory cell recruitment.  The Journal of Immunology. Vol. 168, no. 2: 869-874. http://www.ncbi.nlm.nih.gov/pubmed/11777984.
  25. White P, Burton KA, Fowden AL and Dauncey MJ. 2001. Developmental expression analysis of thyroid hormone receptor isoforms reveals new insights into their essential functions in cardiac and skeletal muscles.  FASEB Journal. Vol. 15, no. 8: 1367-1376. http://www.ncbi.nlm.nih.gov/pubmed/11387234.
  26. Dauncey MJ, White P, Burton KA, and Katsumata M. 2001. Nutrition-hormone receptor-gene interactions: implications for development and disease.  Proceedings of the Nutrition Society. Vol. 60, no. 1: 63-72. http://www.ncbi.nlm.nih.gov/pubmed/11310425.
  27. White P, Cattaneo D and Dauncey MJ. 2000. Postnatal regulation of myosin heavy chain isoform and metabolic enzyme expression by nutrition.  British Journal of Nutrition. Vol. 84, no. 2: 185-194. http://www.ncbi.nlm.nih.gov/pubmed/11029969.
  28. White P and Cooke NE. 2000. The multifunctional properties and characteristics of Vitamin D Binding Protein.  Trends in Endocrinology and Metabolism. Vol. 11, no. 8: 320-327. http://www.ncbi.nlm.nih.gov/pubmed/10996527.
  29. Katsumata M, Cattaneo D, White P, Burton KA and Dauncey MJ. 2000. Growth hormone receptor gene expression in porcine skeletal and cardiac muscles is selectively regulated by postnatal undernutrition.  Journal of Nutrition (USA). Vol. 130, no. 10: 2482-2488. http://www.ncbi.nlm.nih.gov/pubmed/11015477.
  30. White P, Burton KA, Cattaneo D, Harrison AP and Dauncey MJ. 1995. Biotechnological approach to the study of the interactions between nutritional status and animal growth. In State of the Art of Italian Research. Breshia, Italy: The Field of Biotechnologies Applied to Veterinary Medicine. 271-279.
  31. White P and Dauncey MJ. 1999. Differential expression of thyroid hormone receptor isoforms is strikingly related to cardiac and skeletal muscle phenotype during postnatal development.  Journal of Molecular Endocrinology. Vol. 23, no. 2: 241-254. http://www.ncbi.nlm.nih.gov/pubmed/10514561.
  32. Dauncey MJ, Burton KA, White P, Harrison AP, Gilmour RS, Duchamp C and Cattaneo D. 1994. Nutritional regulation of growth hormone receptor gene expression.  FASEB Journal. Vol. 8, no. 1: 81-88. http://www.ncbi.nlm.nih.gov/pubmed/7507871.
  33. Gu, Chunyan. Stein, Gretchen H. Pan, Ning. Goebbels, Sandra. Hornberg, Hanna. Nave, Klaus-Armin. Herrera, Pedro. White, Peter. Kaestner, Klaus H. Sussel, Lori. Lee, Jacqueline E. (2010). Pancreatic beta cells require NeuroD to achieve and maintain functional maturity. Cell Metabolism 11(4):298-310.
  34. Simonson ML, Alessio HM, White P, Newsom DL, Hagerman AE. (2010) Acute physical activity effects on cardiac gene expression. Exp. Physiol. 95(11):1071-1080.
  35. Popkie AP, Zeidner LC, Albrecht AM, D’Ippolito A, Eckardt S, Newsom DE, Groden J, Doble BW, Aronow B, McLaughlin KJ, White P, Phiel CJ. (2010) Phosphatidylinositol 3-kinase (PI3K) signaling via glycogen synthase kinase-3 (Gsk-3) regulates DNA methalyation of imprinted loci. J. Biol Chem 285(53): 41337.
  36. Porat S, Weinberg-Corem N, Tornovsky-Babaey S, Schyr-Ben-Haroush R, Hija A, Stolovich-Rain M, Dadon D, Granot Z, Ben-Hur V, White P, Girard CA, Karni R, Kaestner KH, Ashcroft FM, Magnuson MA, Saada A, Grimsby J, Glaser B, Dor Y. (2011) Control of Pancreatic ß Cell Regneration by Glucose Metabolism. Cell Metabolism 13(4):440-9.
  37. White, Peter. (2011). Profiling the miRNome: detecting global miRNA expression levels with DNA microarrays. RNA Interference Techniques. The Humanan Press Inc, in press.
  38. Porat S, Weinberg-Corem N, Tornovsky-Babaey S, Schyr-Ben-Haroush R, Hija A, Stolovich-Rain M, Dadon D, Granot Z, Ben-Hur V, White P, Girard CA, Karni R, Kaestner KH, Ashcroft FM, Magnuson MA, Saada A, Grimsby J, Glaser B, Dor Y. (2011) Control of Pancreatic ß Cell Regneration by Glucose Metabolism. Cell Metabolism 13(4):440-9.
  39. Li, Z., Schug, J., Tuteja, G., White, P. and Kaestner, K. H. (2011). The nucleosome map of the mammalian liver. Nature Structural & Molecular Biology 18(6):742-747.
  40. White, Peter. (2011). Profiling the miRNome: Detecting Global miRNA Expression Levels with DNA Microarrays. In: RNA Interference Techniques, S. Q. Harper, ed. (New York, Humana Press, c/o Springer Science+Business Media, LLC), pp 91-111.

Additional Publications Facilitated by the BGC

  1. DiRosario J, Divers E. Wang C, Charrier A, Jukkola P, Etter J, Auer H, Velazquez V, Newsom DL, McCarty D, Fu H (2008) Innate and Adaptive Immune Activation in the Brain of Mucopolysaccharidosis IIIB Mouse Model. (In press, J. Neuroscience Res.)
  2. Allen CE, Du J, Jiang B, Huang Q and Barnard J. (2008) Transformation by Oncogenic Ras Expands the Early Genomic Response to Transforming Growth Factor β in Intestinal Epithelia Cells. (In press, Neoplasia)
  3. Auer H, Newsom DL, Nowak NJ, McHugh KM, Singh S, Yu CY, Yang Y, Wenger GD, Gastier-Foster JM and Kornacker K. (2007) Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays. BMC Genomics 8:111. PMID: 17470268
  4. Vasko V, Espinosa AV, Scouten W, He H, Auer H, Liyanarachchi S, Larin A, Savchenko V, Francis GL, de la Chapelle A, Saji M, Ringel MD. (2007) Gene expression and functional evidence of epithelial-to-mesenchymal transition in papillary thyroid carcinoma invasion. Proc Natl Acad Sci U S A. 104(8):2803-8. PMID: 17296934
  5. Guzman J, Yu JG, Suntres Z, Bozarov A, Cooke H, Javed N, Auer H, Palatini J, Hassanain HH, Cardounel AJ, Javed A, Grants I, Wunderlich JE, Christofi FL. (2006) ADOA3R as a therapeutic target in experimental colitis: proof by validated high-density oligonucleotide microarray analysis. Inflamm Bowel Dis. 12(8):766-89. PMID: 16917233
  6. Smith LT, Mayerson J, Nowak NJ, Suster D, Mohammed N, Long S, Auer H, Jones S, McKeegan C, Young G, Bos G, Plass C, Morrison C. (2006) 20q11.1 amplification in giant-cell tumor of bone: Array CGH, FISH, and association with outcome. Genes Chromosomes Cancer. 45(10):957-66. PMID: 16847944
  7. Knudtson KL, Auer H, Brooks AI, Griffin C, Grills G, Hester S, Khitrov G, Lilley KS, Massimi A, Tiesman JP, Viale A. (2006) The ABRF MARG microarray survey 2005: taking the pulse of the microarray field. J Biomol Tech. 17(2):176-86. PMID: 16741246
  8. Morrison C, Radmacher M, Mohammed N, Suster D, Auer H, Jones S, Riggenbach J, Kelbick N, Bos G, Mayerson J. (2005) MYC amplification and polysomy 8 in chondrosarcoma: array comparative genomic hybridization, fluorescent in situ hybridization, and association with outcome. J Clin Oncol. 23(36):9369-76. PMID: 16361637
  9. Ye J, Ai X, Eugeni EE, Zhang L, Carpenter LR, Jelinek MA, Freitas MA, Parthun MR. (2005) Histone H4 lysine 91 acetylation a core domain modification associated with chromatin assembly. Mol Cell. 18(1):123-30. PMID: 15808514
  10. Baldus CD, Liyanarachchi S, Mrózek K, Auer H, Tanner SM, Guimond M, Ruppert AS, Mohamed N, Davuluri RV, Caligiuri MA, Bloomfield CD, de la Chapelle A. (2004) Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes. Proc Natl Acad Sci U S A. 101(11):3915-20. PMID: 15007164
  11. Yao R, Wang Y, Lemon WJ, Lubet RA, You M. (2004) Budesonide exerts its chemopreventive efficacy during mouse lung tumorigenesis by modulating gene expressions. Oncogene. 23(46):7746-52. PMID: 15361829
  12. Nakagawa H, Liyanarachchi S, Davuluri RV, Auer H, Martin EW Jr, de la Chapelle A, Frankel WL. (2004) Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their expression profiles. Oncogene. 23(44):7366-77. PMID: 15326482
  13. Bonner AE, Wang Y, You M. (2004) Gene expression profiling of mouse teratocarcinomas uncovers epigenetic changes associated with the transformation of mouse embryonic stem cells. Neoplasia. 6(5):490-502. PMID: 15548357
  14. Amatschek S, Koenig U, Auer H, Steinlein P, Pacher M, Gruenfelder A, Dekan G, Vogl S, Kubista E, Heider KH, Stratowa C, Schreiber M, Sommergruber W. (2004) Tissue-wide expression profiling using cDNA subtraction and microarrays to identify tumor-specific genes. Cancer Res. 64(3):844-56. PMID: 14871811
  15. Bonner AE, Lemon WJ, Devereux TR, Lubet RA, You M. (2004) Molecular profiling of mouse lung tumors: association with tumor progression, lung development, and human lung adenocarcinomas. Oncogene. 23(5):1166-76. PMID: 14647414
  16. Auer H, Lyianarachchi S, Newsom D, Klisovic MI, Marcucci G, Kornacker K. (2003) Chipping away at the chip bias: RNA degradation in microarray analysis. Nat Genet. 35(4):292-3. PMID: 14647279